Third comparison:BXZ2 phage genome
The Third comparison is with BXZ2 phage genome:
1- this is the result of Local (Smith-Waterman) comparison between the whole BXZ2 sequence and Proteins of Mycobacterium ulcerans Agy99:
By BugView:
4208 comparisons for user's query sequence and Mycobacterium ulcerans Agy99.
Finished in 4376 seconds.
Highest score = 1516 for cds_3629 (118619508)
Second score = 1108 for cds_967 (118616873)
Third score = 979 for cds_3641 (118619519)
2-I have compared ,one by one, the indicated M.ulcerans cds with the BXZ2 phage genome:
1°cds_3629
cds_3629 is (MUL_4367):
PE-PGRS family protein (Mycobacterium ulcerans Agy99)
Other Aliases: MUL_4367
Annotation: NC_008611.1 (4845511..4848744, complement)
GeneID: 4550406
By BugView:
89 comparisons for cds_3629 (118619508)
Finished in 1 seconds.
Highest score = 406 for cds_3 (29566025)
Second score = 247 for cds_4 (29566026)
Third score = 110 for cds_26 (29566045)
cds_3
Bxz2_gp4
gp4 [Mycobacterium phage Bxz2]
Other Aliases: Bxz2_gp4, Bxz2p04
Annotation: NC_004682.1 (1692..2726)
GeneID: 1259216
Accession.......... GeneID
| NP_817595.1 | 1259216 |
I have compared , the indicated cds 3 with the M.ulcerans genome:
By BugView:
4208 comparisons for cds_3 (29566025)
Finished in 46 seconds.
Highest score = 414 for cds_3076 (118618968)
Second score = 413 for cds_620 (118616526)
Third score = 406 for cds_3629 (118619508)
2°cds_967
By BugView:
89 comparisons for cds_967 (118616873)
Finished in 0 seconds.
Highest score = 281 for cds_3 (29566025)
Second score = 212 for cds_4 (29566026)
Third score = 111 for cds_26 (29566045)
3°cds_3641
By BugView:
89 comparisons for cds_3641 (118619519)
Finished in 1 seconds.
Highest score = 383 for cds_3 (29566025)
Second score = 208 for cds_4 (29566026)
Third score = 118 for cds_26 (29566045)
In the cluster is present the gp5 from cds 4. But the gp4 from cds 3 is correlated to the gp5.
Accession................. GeneID
| NP_817596.1 | 1259217 |
