Cds from D29,L5,BXZ2 and TM4 mycobacterium phages

Single comparison between two genomes

I have investigated the genomes of these phages searching for a relationship of cause and effect (D29,Bxz2,L5 and TM4 phages grow on M.ulcerans and M.smegmatis).

These are the results after the comparisons (D29,BXZ2,L5 and TM4):

Sequence Identity Matrix(%)

By basebybase software:





Each time two genomes are compared by BugView software ( Smith Waterman algorithm ).

The results obtained are(cds from files .gbk):

D29 on L5:31,39,85/on BXZ2:3,4,38/on TM4:24,27,39

L5 on D29:34,39,82/on BXZ2:3,4,38/on TM4:24,27,39

BXZ2 on D29:34,39,51/on L5:31,39,85/on TM4:4,27,39

TM4 on D29:34,39,80/on L5:31,39,85/on BXZ2:4,2,38

By Sockeye software I have showed all genomes and each cds:

cds 4 from Bxz2 genome

cds 24 from TM4 genome

cds 31 from L5 genome

cds 34 from D29 genome

Dot Plot by Serolis software

(before DNA -DNA and after Protein-protein)