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"In silico"


From Wikipedia
If the target host* of a phage therapy treatment is not an animal the term "biocontrol" (as in phage-mediated biocontrol of bacteria) is usually employed, rather than "phage therapy".

In silico
From:"Genomics,Proteomics and Clinical Bacteriology",N.Woodford and Alan P.Johnson

Phrase that emphasizes the fact that many molecular biologists spend increasing amounts of their time in front of a computer screen, generating hypotheses that can subsequently be tested and (hopefully) confirmed in the laboratory.


Phage Therapy is influenced by:

Phage therapy is influenced by:

Country : the epidemiological situation is different from country to country in terms of circulating bacteria and bacteriophages. Example: lytic phages from Italy may be no active on the same bacteria (genus and species) isolated from another country and vice versa.
Temporariness
Mutation rate
Phenotypical delay
Phage cocktail

My point of view

Friday, 27 February 2009

Methods for Typing Escherichia coli strains





Genome sequence of enterohaemorrhagic Escherichia coli O157:H7

Escherichia coli O157:H7 EDL933 Genome

Genome Properties Report

Genes assigned a role category

Organism Gene List


PFGE method

Organism-------------------Escherichia coli

Recommended lysis enzyme--proteinase K

Restriction enzyme---------XbaI,NotI,SfiI

Approximate no. of
--1520,1215,1520
restriction Fragments


Fragments size
-10500,101000,10700
range (kb)


General information

E.coli (CDA)

E.coli (FDA)

Identification of Enterobacteriaceae

E.coli 0157

Escherichia coli can be classified by their characteristic virulence properties and different mechanisms that cause disease.

A. Enteroaggregative E. coli (EAEC)
B. Enterohemorrhagic E. coli (EHEC)
C. Enteroinvasive E. coli (EIEC)
D. Enteropathogenic E. coli (EPEC)
E. Enterotoxigenic E. coli (ETEC)

All of the above classes of E. coli cause diarrhea.However, only EHEC produce a verotoxin that has many properties that are similar to Shiga toxin.
EHEC has been associated with hemorrhagic colitis,
a severe form of diarrhea, and with HUS. HUS is a disease resulting in acute renal failure, microangiopathic hemolytic anemia, and thrombocytopenia.

Escherichia coli 0157:H7 strains are classically associated with outbreaks of diarrhea after ingestion of undercooked hamburger at fastfood restaurants. Many cases of hemorrhagic colitis and its associated complications can be prevented by thoroughly cooking ground beef.The other organisms listed can cause GI disturbances;
however, E. coli
is the classic disturbing pathogen in this case.