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"In silico"


From Wikipedia
If the target host* of a phage therapy treatment is not an animal the term "biocontrol" (as in phage-mediated biocontrol of bacteria) is usually employed, rather than "phage therapy".

In silico
From:"Genomics,Proteomics and Clinical Bacteriology",N.Woodford and Alan P.Johnson

Phrase that emphasizes the fact that many molecular biologists spend increasing amounts of their time in front of a computer screen, generating hypotheses that can subsequently be tested and (hopefully) confirmed in the laboratory.


Phage Therapy is influenced by:

Phage therapy is influenced by:

Country : the epidemiological situation is different from country to country in terms of circulating bacteria and bacteriophages. Example: lytic phages from Italy may be no active on the same bacteria (genus and species) isolated from another country and vice versa.
Temporariness
Mutation rate
Phenotypical delay
Phage cocktail

My point of view

Saturday 28 February 2009

Methods for Typing klebsiella spp.


Complete Genome Sequence Klebsiella pneumoniae 342

Klebsiella pneumoniae Kp342 Genome

Genome Properties Report

Genes assigned a role category

Organism Gene List

PFGE method


Organism-------------------Klebsiella spp.

Recommended lysis enzyme--proteinase K

Restriction enzyme---------XbaI

Approximate no. of---------15–20
restriction Fragments

Fragments size------------10–700
range (kb)


General information



The genus Klebsiella, which belongs to the includes family Enterobacteriaceae five species,with the most clinically significant being K. pneumoniae.

Klebsiella pneumoniae is a large, nonmotile, with a prominent polysaccharide gram-negative rod capsule.
The capsule is antiphagocytic and retards leukocyte migration into an infected area.

Another virulence factor of K. pneumoniae is its propensity to develop resistance to multiple antibiotics.All strains of K. pneumoniae are innately resistant to ampicillin, because of the production of β-lactamase.

Acquisition of resistance to other antibiotics usually occurs by transfer of plasmids from other organisms.Recently strains of nosocomially acquired K.pneumoniae have been isolated that produce an extended spectrum β-lactamase and therefore are resistant to all β-lactam antibiotics.

Klebsiella pneumoniae will grow rapidly producing large mucoid colonies on routine laboratory media.Colonies are often extremely mucoid and will tend to drip into the lid of the plate while incubating in an inverted position. Pink colonies will be evident on MacConkey agar indicating their fermentation of lactose.
Both K. oxytoca and especially K. rhinoscleromatis are slower growing than
K. pneumoniae and the other Enterobacteriaceae. All Klebsiella species are very closely related with nearly identical biochemical reactions, except for the fact that
K. pneumoniae is indole negative, and K. oxytoca is indole positive.

Treatment of K. pneumoniae pneumonia would be based on the susceptibility of the isolate. Treatment can be complicated by the presence of multidrug-resistant strains.Most strains are susceptible to extended spectrum cephalosporins such as cefepime as well as fluoroquinolones such as moxifloxacin. In cases of strains that produce an extended spectrum β-lactamase, the treatment of choice would be imipenem or meropenem.

Prevention of spread in the hospital would involve appropriate infection control procedures to isolate patients with multidrug-resistant organisms. Klebsiella oxytoca has similar susceptibility patterns as K. pneumoniae and can also produce extended spectrum β-lactamases.