By way of an example I have compared only one cds, the cds 3, of M.marinum and M.ulcerans genome.
Global (Needleman-Wunsch) comparison between:
Protein: 118615923 of cds_3 from Mycobacterium ulcerans Agy99
Protein: 183980039 of cds_3 from Mycobacterium marinum M
Generated: Wed Mar 10 22:33:19 CET 2010
Score: 1232
VNGDGEQPGPGDGAARDELPSMDLVRRTLAEARAAARARGQDPGRGFAAG
VSDDGEQPGPGDGAARDELSGMDLVRRTLAEARAAARARGQDPGRGFAAG
PAPRRVAGRRRSWSGPGPDTRDPQPLGKLTRDLAKKRGWSGHVAEGTVLG
PAPRRVAGRRRSWSGPGPDTRDPQPLGKLTRDLAKKRGWSGHVAEGTVLG
QWSQVVGAQIADHATPTALNEGVLSVTAESTAWATQLRIMQSQLLAKIAA
QWSRVVGAQIADHATPTALNEGVLSVTAESTAWATQLRIMQSQLLAKIAA
AVGNGVVTSLKITGPASPSWRKGPRHIAGRGPRDTYG
AVGNGVVTSLKITGPASPSWRKGPRHIAGRGPRDTYG
Percentage Identity = 97,3%
Cds 3 DNA Dot plot
Cds 3 Protein Dot plot
Cds 3 RNA m (secondary structure)