Wednesday, 30 September 2009

D29, L5, Bxz2 and TM4 mycobacteriophages


I have investigated the genomes of these phages searching for a relationship of cause and effect (D29,Bxz2,L5 and TM4 phages grow on M.ulcerans and M.smegmatis).
Each time two genomes are compared by BugView software ( Smith Waterman algorithm ).The results obtained are(cds from files .gbk):



D29 on L5:31,39,85/on BXZ2:3,4,38/on TM4:24,27,39

L5 on D29:34,39,82 /on BXZ2:3,4,38/on TM4:24,27,39

BXZ2 on D29:34,39,51/on L5:31,39,85/on TM4:24,27,39

TM4 on D29:34,39,80/on L5:31,39,85/on BXZ2:4,2,38




I have selected ( Sockeye software):

cds 4 from Bxz2 genome

cds 24 from TM4 genome



cds 31 from L5 genome


cds 34 from D29 genome