*Go to HAMAP proteomes and write in the upper window : Mycobacterium phage D29 and open.
The page with genes and proteins is showing.
*Open Q38361 for complete information on Integrase gene of Mycobacterium phage D29.
Read the Function : "Integrase is necessary for
integration of the phage into the host genome
by site-specific recombination".
Read all points of this page.
For example: the number of amino acids is 333 and it belongs
to the 'phage' integrase family and it has one active site
for O-(3'-phospho-DNA)-tyrosine intermediate in position 310.
There is its sequence in Fasta code ( amino acid sequence).
*Go to RefSeq open NP_046850.1. and see the function
this gene into the genome:
region name="DNA BRE C" or "DNA breaking
-rejoining enzymes,C-terminal catalytic domain.
The DNA breaking-rejoining enzyme superfamily
includes type IB topoisomerases and tyrosine
recombinases that share the same fold in their catalytic
domain containing six conserved active site...; cl00213"
Open CDD:"140517"
Calculated mol wt= 39869 ( one amino acid is about=
120 and 120 *333= 39960)
Genome Nucleotides=49081
gp33 ( Integrase ) is at 25359-26429 with Locus tag
D29p32.
*In EBI go to Integr8, write Mycobacterium phage and open.
Select Mycobacterium phage D29 and open here EMBL.
*In Q38361 open AF022214_GR and see the contigs and select 33 (Integrase 25359-26429).
Remember: contig is a Group of cloned (copied) pieces of DNA representing overlapping regions of a particular chromosome.
*Open the green line in Q38361 and see the sequence in amino acids.
