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"In silico"


From Wikipedia
If the target host* of a phage therapy treatment is not an animal the term "biocontrol" (as in phage-mediated biocontrol of bacteria) is usually employed, rather than "phage therapy".

In silico
From:"Genomics,Proteomics and Clinical Bacteriology",N.Woodford and Alan P.Johnson

Phrase that emphasizes the fact that many molecular biologists spend increasing amounts of their time in front of a computer screen, generating hypotheses that can subsequently be tested and (hopefully) confirmed in the laboratory.


Phage Therapy is influenced by:

Phage therapy is influenced by:

Country : the epidemiological situation is different from country to country in terms of circulating bacteria and bacteriophages. Example: lytic phages from Italy may be no active on the same bacteria (genus and species) isolated from another country and vice versa.
Temporariness
Mutation rate
Phenotypical delay
Phage cocktail

My point of view

Friday 20 March 2009

Groundwork for Phage Therapy


From: "RESULTS OF BACTERIOPHAGE TREATMENT OF SUPPURATIVE BACTERIAL INFECTIONS: GENERAL EVALUATION OF THE RESULTS"S. Ślopek, I. Durlakowa, B. Weber-Dąbrowska, A. Kucharewicz-Krukowska, M. Dąbrowski, R. Bisikiewicz, Arch. Immunol. Ther. Exp., 1983, 31, 267

In this scientific work the method description for preparing Bacteria and Bacteriophages used for Phage Therapy is not sufficiently clear.
I have schematized
the method below:


Origin of bacteriophages:

259 virulent bacteriophages including:

-116 for Staphylococcus ( human and animal origin)
-42 for Klebsiella
-39 for Escherichia
-30 for Shigella
-20 for Pseudomonas
-11 for Proteus
-1 for Salmonella enteridis

Phages really used in the course of therapy


-52 for Staphylococcus ( human and animal origin)
-17 for Klebsiella
-20 for Escherichia
-1 for Shigella
-17 for Pseudomonas
-4 for Proteus
-1 for Salmonella enteridis

lysates of virulent bacteriophages which caused a total lysis of the sensitive bacterial strains isolated from the patients are used.

Isolation of bacterial strains from patients and bacterial sensitivity to selected bacteriophages


Bacteria from 18 h broth culture

Bacteria inoculated in new broth and incubate for 4 h at 37°C(shaker)

2-3 ml of suspension are plated on agar plates:

Staphylococcus :Agar plates with Wahl medium

Gram negative bacteria: Agar plates with Phosphate buffer

excess of suspension is removed and agar plates are used after 30 min

One drop of the selected bacteriophage
( diluited 1:10) for each plate


Incubation at 37°C

Staphylococcus : 4h
Pseudomonas :4-5 h
Escherichia,Klebsiella ,Shigella:2-3 h

Transfer into a refrigerator and reading results the following day



Growth of Staphylococcus bacteriophages


Two 0,5L flasks:
a) flask (300ml broth + 5ml 30%glucose+2,5 ml of 18 h Staphylococcus broth culture)
b)Control: (300ml broth + 5ml 30%glucose+2,5 ml of 18 h Staphylococcus broth culture)

Incubation at 37°C,1h

5ml of Phage Lysate or from agar spot are added only in the flask a

The flasks are reincubate at 37°C ( shaker) for 3 h

After the lysis the flasks are stored overnight in a refrigerator

The day after the lysate is tested for the phage presence and if it is turbid is centrifuged 1h at 3,500 rpm. After it is titrated and Thymol crystal is added

the lysate, after 3 days in refrigerator , is collected and poured into ampouls (10ml) and tested fo sterility.


Growth of Bacteriophages for Gram negative baciili( Proteus,Klebsiella ,Escherichia,Shigella , Salmonella and Pseudomonas)


Pseudomonas phages

Two flasks


a)10ml peptone water+ 1-2 ml of 4 h Pseudomonas broth culture
b)Control: 10ml peptone water+ 1-2 ml of 4 h Pseudomonas broth culture


Incubation at 37°C, 2h

5ml of Phage Lysate or from agar spot are added only in the flask a


The flasks are reincubate at 37°C ( shaker) for 3 h

After the lysis the flasks are stored overnight in a refrigerator

The day after the lysate is tested for the phage presence and 2ml of Chloroform is added and shaken 2 min. and left fo 2 h at room temperature and after is stored overnight in a refrigerator.

The day after the lysate is collected and poured into ampouls (10ml) and tested fo sterility.

Remaining Phages

Two flasks

a)10ml Broth+ 1-2 ml of 4 h Strain broth culture
b)Control: 10ml peptone water+ 1-2 ml of 4 h Strain broth culture


Incubation at 37°C, 2h

5ml of Phage Lysate or from agar spot are added only in the flask a


The flasks are reincubate at 37°C ( shaker) for 3 h

After the Lysis the flasks are stored overnight in a refrigerator

The day after the lysate is tested for the phage presence and 2ml of Chloroform is added and shaken 2 min. and left fo 2 h at room temperature and after is stored overnight in a refrigerator.

The day after the lysate is collected and poured into ampouls (10ml) and tested fo sterility.


Therapeutic use of Bacteriophages

Orally:

3 times a day,one 10 ml ampoule,30min. before meal after neutralization of the gastric juice (gelatum, baking soda or a glass of Vichy water)

Directly on a wound (not washed with any antiseptics):

3 times
a day per 24 h